Semantic Web

From OLSUG Wiki

Contents 1 Semantic Web for Life Sciences 1.1 Publications 1.1.1 Peer Reviewed 1.1.2 Other Publications 1.2 Blogs 1.3 Events 1.4 Oracle Technology 1.5 Use Cases of the RDF Data Model 1.6 Partners 1.7 Consortia 1.8 Data & Code

Semantic Web for Life Sciences

Publications

Peer Reviewed

Lam, H.Y.K., Marenco, L., Clark, T., et al. (2006) Semantic Web Meets e-Neuroscience: An RDF Use Case. International Workshop on Semantic e-Science.

Stephens, S., LaVigna, D., DiLascio, M., Luciano J. (2006) Aggregations of Bioinformatics Data Using Semantic Web Technology. Journal Web Semantics. 4, 216-221.

Melton J. (2006) SQL, XQuery, and SPARQL: What's Wrong with This Picture? XTech 2006: Building Web 2.0, 16-19 May 2006, Amsterdam, The Netherlands.

Stephens, S., Rung J. (2006) Advances in systems biology: measurement, modeling and representation. Current Opinion Drug Discovery Development. 9, 240-250.

Stephens S., Morales, A., Quinlan, M. (2006) Applying Semantic Web Technologies to Drug Safety Determination. IEEE Intelligent Systems 21, 82-86.

Other Publications

Oracle Press Release (2007) University of Texas Health Science Center at Houston Deploys Public Health Preparedness Framework with Oracle and TopQuadrant

Wolfson W. (2006) Oracle OpenWorld 2006: Pharma Stuck on Semantic Web.

Sahoo S. (2006) Converting Biological Information to the W3C Resource Description Framework (RDF): Experience with Entrez Gene. Report from Lister Hill National Center for Biomedical Communications (NLM/NIH).

Louie, A. (2006) Semantic Web at the Cusp of Reality. Bio-IT World. Jun.

Baum D. (2006) Semantic Breakthrough. Oracle Magazine. May/June 2006, 42-46.

Stephens, S. (2006) The Data Integration Saga: A Question of Semantics? Drug Discovery News.

Salamone, S. (2005) Masters of the Semantic Web. Bio-IT World. Oct.

Stephens, S. (2005) Semantic Data Integration in the Life Sciences. Oracle White Paper.

Publication Archive

Blogs

Sep. 06 - The Semantic Web Runs on Oracle - Ivan Hermann.

Sep. 06 - The Semantic Web Runs on Oracle - Justin Kestelyn.

Jul. 06 - Oracle, graphical data models, and RDF - Curt Monash.

Jun. 06 - Oracle takes Semantic Web to the Mainstream - Martin Dzbor.

May 06 - Leading the Way - Newmana.

Mar. 06 - Closed World Assumptions, Conjunctive Querying, and Oracle 10g - Ogbuji.

Mar. 06 - Wilbur-and-O: Semantic Technology 2006 - Ora Lassila.

Jan. 06 - Best Reasoner Available? - Seth Ladd.

Blog Archive

Events

Dec. 5, 2006 - 2nd Modern Drug Discovery and Development Summit, Philadelphia, PA. Presentation: Integrating Life Science Data Using Semantic Technologies

Nov. 8, 2006 - International Semantic Web Conference, Athens, GA. Presentation: AlzPharm: A Light-Weight RDF Warehouse for Integrating Neurodegenerative Data

Nov. 8, 2006 - International Semantic Web Conference, Athens, GA. Presentation: Integrating BioPAX compliant Pathway Knowledgebases

Nov. 8, 2006 - International Semantic Web Conference, Athens, GA. Presentation: Adapting Resources to the Semantic Web: Experience with Entrez Gene

Nov. 8, 2006 - International Semantic Web Conference, Athens, GA. Presentation: Integrating Enterprise Data with Semantic Technologies

Nov. 6, 2006 - Workshop for the Health Care and Life Sciences Interest Group, International Semantic Web Conference, Athens, GA.

Oct. 26, 2006 - Semantic Data Integration in Life Sciences, Oracle OpenWorld, San Francisco, CA. Presentation: Semantic Data Integration in the Life Sciences OracleEli Lilly Pfizer

Sep. 26, 2006 - Bridging Pharma and IT, Philadelphia, PA. Presentation: Managing and Integrating Discovery Data with Semantic Technologies

Aug. 08, 2006 - Drug Discovery Technology Presentation: Panel discussion on How Semantic Web Technologies are Enabling the Bench to Bedside Vision

Jun. 12, 2006 - 4th International Workshop on Computational Systems Biology. Presentation: Advances in Data Integration and Representation in Systems Biology

Jun. 9, 2006 - RDF, Ontologies and Meta-Data Workshop - National eScience Centre Workshop. Presentation: Applications of Semantic Web Technology in the Life Sciences

May 25, 2006 - World Wide Web Conference Presentation: The Integration of Biological Data Using Semantic Web Technologies

Event Archive

Oracle Technology

RDF Data Model Manual

RDF Data Model Demos

Use Cases of the RDF Data Model

Stanford University Knowledge Base

Partners

TopQuadrant have integrated TopBraid Composer with the Oracle RDF Data Model

Consortia

W3C Semantic Web for Health Care Life Sciences Interest Group (HCLSIG)

BioRDF HCLSIG Subgroup

Data & Code

RDFused by Stephens et al (2006) Aggregation of Bioinformatics Data Using Semantic Web Technology. J. Web Semantics.

Relational.OWL using stored procedures in Oracle 10g